Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

AnalyticCoil	Prototype of a Biot-Savart loop
AnalyticGradPulse	Gradient with analytic shape
AnalyticPulseShape	Prepare and GiNaC evaluation of analytic pulse shapes
AnalyticRFPulse	Analytic RF pulse
AtomicSequence	Atomic sequence prototype
Attribute	Attribute class. Attributes are private member variables of a Prototype which are accessible through XML and, thus, they are subject to observation mechanism
BiotSavartLoop	Prototype of a Biot-Savart loop
Bloch_CV_Model	Numerical solving of Bloch equations As an application of the CVODE solver by Lawrence Livermore National Laboratory - Livermore, CA http://www.llnl.gov/CASC/sundials
Coil	Base class of coil objects
CoilArray	Coil configuration and sensitivities
CoilPrototypeFactory	This interface knows about coil prototypes
ConcatSequence	Concat sequence prototype
ConstantGradPulse	Gradient with constant amplitude
DelayAtomicSequence	Prototype of a delay
DOMTreeErrorReporter	XML exception handling
DynamicVariables	Instance class holding dynamic sample properties
EmptyPulse	Prototype of an empty pulse
excompiler
ExternalCoil	Prototype of an ideal coil
ExternalGradPulse	External gradient prototype
ExternalPulseData	Read and retrieve data of external pulse shapes
ExternalRFPulse	RF pulse with external pulse shape
GaussianRFPulse	Gaussian shaped radio frequency pulses
GradPulse	Base class and prototype for all gradient pulses
HardRFPulse	Prototype for hard radio frequency pulses
IdealCoil	Prototype of an ideal coil
Model	Base class for MR model solver
Module	Module super class! ABC for all Objects in the sequence framework
ModulePrototypeFactory	Module factory
Mpi2Evolution	Pure virtual class; provides methods to write evolution file using parallel I/O
nvec	Structure keeping the vectors for cvode
Parameters	World parameters provide the parametric data of the sequence
Prototype	Prototype super class
PrototypeFactory	Base class for prototype factories
Pulse	Pulse Super Class. ABC for all RF and gradient pulses
RepIter	A super-simple iterator for counting the repetitions of a concat sequence
Repository	Signal repository structure
RFPulse	Super class for all RF pulses
Sample	The Sample is the object to simulate. It contains the spins
SampleReorderShuffle	Shuffles the order in which spins are simulated
SampleReorderStrategyInterface	Base class for different sample reorder strategies
SechRFPulse	Sech shaped radio frequency pulses
Sequence	Super class for all sequence (non-pulse) modules
SequenceTree	Singelton implementation of the lfo-tree representation of the whole sequence
TPOI::set	The set of data of each time point of interest
Signal	The signal store and IO
Simulator	The simulator
SincRFPulse	The prototype for Sinc RF Pulse
Spin_data	Brief Spin structure
SpiralGradPulse	Prototype of a spiral gradient as described by Pauly et al
StrX	Simple class for transcoding sax errors to the machines locale
TPOI	Time points of interest of all modules
Trajectory	Context class for trajectories (design pattern: Strategy)
Trajectory1D	One-dimensional Trajectory
TrajectoryEmpty	The "do nothing"-strategy
TrajectoryInterface	Pure virtual base class for all Trajectories
TrajectoryMotion	Motion Trajectory
TrajectoryT2s	Strategy for T2s; needs some extra handling for GetValueDerived
TrapGradPulse	Prototype of a trapezoidal gradient pulse (e.g. for cartesian k-space imaging)
TriangleGradPulse	Gradient with constant amplitude
TxRxPhase	Phase physics super class
World	The simulated reality
XMLIO	XML file-IO class