AtomicSequence.h

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/*
 *  JEMRIS Copyright (C) 
 *                        2006-2025  Tony Stoecker
 *                        2007-2018  Kaveh Vahedipour
 *                        2009-2019  Daniel Pflugfelder
 *                                  
 *
 *  This program is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 *  This program is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with this program; if not, write to the Free Software
 *  Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
 */
 
#ifndef ATOMICSEQUENCE_H_
#define ATOMICSEQUENCE_H_
 
#include "NDData.h"
 
#include "Sequence.h"
#include "Pulse.h"
 
using std::vector;
 
class AtomicSequence : public Sequence {
 
 public:
 
    AtomicSequence() :m_theta(0.), m_non_lin_grad(0.), m_alpha(0.), m_phi(0.), m_eddy(false) {};
 
    AtomicSequence  (const AtomicSequence&);
 
    virtual ~AtomicSequence () {};
 
    inline AtomicSequence* Clone() const {return (new AtomicSequence(*this));};
 
    virtual bool    Prepare        (const PrepareMode mode);
 
    Pulse*          GetPulse           (int  number)  { return m_pulses.at(number); };
 
    int             GetNumberOfPulses ()             { return m_pulses.size(); };
 
    virtual void    GetValue          (double * dAllVal, double const time) ;
 
 
    double          GetDuration    ();
 
 
    //virtual void    GetValue          (double * dAllVal, double const time, double * pos[3]) {};
 
    void Rotation (double * Grot);
 
    inline bool          HasNonLinGrad () {return m_non_lin_grad;};
 
    inline void          SetNonLinGrad (bool val) {m_non_lin_grad=val;};
 
    void           CollectTPOIs       ();
 
    virtual void CollectSeqData (NDData<double>& seqdata, double& t, long& offset);
 
    virtual void CollectSeqData (OutputSequenceData *seqdata);
 
    virtual long  GetNumOfADCs ();
 
 
    void    GetValueLingeringEddyCurrents (double * dAllVal, double const time);
 
    void    UpdateEddyCurrents ();
 
    void    PrepareEddyCurrents ();
 
    bool    HasEddyCurrents () {return m_eddy; };
 
    void    SetEddyCurrents (bool val) {m_eddy = val; };
 
protected:
    virtual string          GetInfo        ();
 
 
 private:
 
    vector<Pulse*> m_pulses;       
    bool           m_non_lin_grad; 
    double         m_alpha;        
    double         m_theta;        
    double         m_phi;          
    bool           m_eddy;                 
};
 
#endif /*ATOMICSEQUENCE_H_*/