Model.h

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/*
 *  JEMRIS Copyright (C) 
 *                        2006-2025  Tony Stoecker
 *                        2007-2018  Kaveh Vahedipour
 *                        2009-2019  Daniel Pflugfelder
 *                                  
 *
 *  This program is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 *  This program is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with this program; if not, write to the Free Software
 *  Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
 */
 
#ifndef MODEL_H_
#define MODEL_H_
 
#include <math.h>
 
#include "World.h"
#include "Sample.h"
#include "Module.h"
#include "AtomicSequence.h"
#include "ConcatSequence.h"
#include "Container.h"
#include "ContainerSequence.h"
 
using namespace std;
 
//class declarations
class CoilArray;
 
 
 
class Model {
 
 public:
 
        Model();
 
        virtual ~Model() {};
 
        void Prepare(CoilArray* pRxCoilArray, CoilArray* pTxCoilArray, ConcatSequence* pConcatSequence, Sample* pSample);
 
        inline void SetSequence(ConcatSequence* pConcatSequence){m_concat_sequence  = pConcatSequence;};
 
        void Solve();
 
    static void saveEvolution (long index, bool close_files) ;
 
 
    void SetDumpProgress(bool val) { m_do_dump_progress = val; };
 
 protected:
 
    virtual void InitSolver() = 0;
 
    virtual void FreeSolver() = 0;
 
        virtual bool Calculate(double next_tStop) = 0;
 
        void RunSequenceTree (double& dTimeShift, long& lIndexShift, Module* module);
 
    World*          m_world;            
    CoilArray*      m_rx_coil_array;    
    CoilArray*      m_tx_coil_array;    
    ConcatSequence* m_concat_sequence;  
    Sample*         m_sample;           
    double              m_accuracy_factor;  
    bool            m_do_dump_progress; 
 private:
 
    bool            m_aux; //for debugging
 
    void UpdateProcessCounter (const long lSpin);
 
    void DumpRestartInfo(long lSpin);
 
 
 
};
 
#endif /*MODEL_H_*/