Microstructure Class Reference

Microsructure base class. More...

#include <Microstructure.h>

Inheritance diagram for Microstructure:

Public Member Functions
virtual void	IndexObject (triple pos, int &LastId, int &shellid)
virtual double	GetD (int LastId=-1, int shellid=-1)
void	SetExternalDiffusionConstant (double d)
bool	isInsideBox (triple pos)
triple	PeriodicBoundary (triple trialpos)
void	SetBoxSize (double size)
double	GetBoxSize ()

Protected Attributes
double	m_boxsize
double	m_D_external
RNG *	m_rng

Detailed Description

Microsructure base class.

Member Function Documentation

GetD()

virtual double Microstructure::GetD ( int LastId = -1, int shellid = -1 )

inlinevirtual

returns Diffusion constant. unit: mm^2/ms

Reimplemented in MicrostructureSingleFiber, MicrostructureBoxes, and MicrostructureKissingFiber.

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IndexObject()

virtual void Microstructure::IndexObject ( triple pos, int & LastId, int & shellid )

inlinevirtual

return index of Microstructure object; -1 -> outside. shellid: object may have multiple layer (myelinated axon). id of layer; shellid = -1 -> object has no layers. LastId: during tracking of spin: object where last position was in.

Reimplemented in MicrostructureBoxes, MicrostructureKissingFiber, and MicrostructureSingleFiber.

SetExternalDiffusionConstant()

void Microstructure::SetExternalDiffusionConstant ( double d )

inline

unit: mm^2/ms

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The documentation for this class was generated from the following files:

• /Users/stoeckert/DZNE/workspace/jemris/src/Microstructure.h
• /Users/stoeckert/DZNE/workspace/jemris/src/Microstructure.cpp